HL_9K0Z_066

3D structure

PDB id

9K0Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

EF-G2 bound 70S ribosome complex of M. smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GGAUAAGC

Length

8 nucleotides

Bulged bases

9K0Z|1|h|U|1075, 9K0Z|1|h|G|1078

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9K0Z_066 not in the Motif Atlas

Geometric match to HL_7A0S_026

Geometric discrepancy: 0.138

The information below is about HL_7A0S_026

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

9K0Z|1|h|G|1072
9K0Z|1|h|G|1073
9K0Z|1|h|A|1074
9K0Z|1|h|U|1075
9K0Z|1|h|A|1076
9K0Z|1|h|A|1077
9K0Z|1|h|G|1078
9K0Z|1|h|C|1079

Current chains

Chain h

23S ribosomal RNA

Nearby chains

Chain 3

50S ribosomal protein bL37

Chain t

Large ribosomal subunit protein uL16