HL_9K0Z_067

3D structure

PDB id

9K0Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

EF-G2 bound 70S ribosome complex of M. smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GAAACAGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9K0Z_067 not in the Motif Atlas

Geometric match to HL_5J7L_160

Geometric discrepancy: 0.1066

The information below is about HL_5J7L_160

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_42998.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

9K0Z|1|h|G|1096
9K0Z|1|h|A|1097
9K0Z|1|h|A|1098
9K0Z|1|h|A|1099
9K0Z|1|h|C|1100
9K0Z|1|h|A|1101
9K0Z|1|h|G|1102
9K0Z|1|h|C|1103

Current chains

Chain h

23S ribosomal RNA

Nearby chains

Chain 3

50S ribosomal protein bL37

Chain a

Large ribosomal subunit protein uL30

Chain x

Large ribosomal subunit protein bL20