HL_9K0Z_072

3D structure

PDB id

9K0Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

EF-G2 bound 70S ribosome complex of M. smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GUGAGAACC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9K0Z_072 not in the Motif Atlas

Geometric match to HL_8CRE_030

Geometric discrepancy: 0.1003

The information below is about HL_8CRE_030

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.9

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

9K0Z|1|h|G|1396
9K0Z|1|h|U|1397
9K0Z|1|h|G|1398
9K0Z|1|h|A|1399
9K0Z|1|h|G|1400
9K0Z|1|h|A|1401
9K0Z|1|h|A|1402
9K0Z|1|h|C|1403
9K0Z|1|h|C|1404

Current chains

Chain h

23S ribosomal RNA

Nearby chains

Chain b

Large ribosomal subunit protein bL32

Chain u

Large ribosomal subunit protein bL17

Chain z

Large ribosomal subunit protein uL22