HL_9K0Z_073

3D structure

PDB id

9K0Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

EF-G2 bound 70S ribosome complex of M. smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GCCAGUC

Length

7 nucleotides

Bulged bases

9K0Z|1|h|C|1440, 9K0Z|1|h|U|1444

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9K0Z_073 not in the Motif Atlas

Geometric match to HL_4V9F_035

Geometric discrepancy: 0.114

The information below is about HL_4V9F_035

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_49081.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

17

Unit IDs

9K0Z|1|h|G|1439
9K0Z|1|h|C|1440
9K0Z|1|h|C|1441
9K0Z|1|h|A|1442
9K0Z|1|h|G|1443
9K0Z|1|h|U|1444
9K0Z|1|h|C|1445

Current chains

Chain h

23S ribosomal RNA

Nearby chains

Chain u

Large ribosomal subunit protein bL17

Chain z

Large ribosomal subunit protein uL22