HL_9K0Z_077

3D structure

PDB id

9K0Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

EF-G2 bound 70S ribosome complex of M. smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GUAAAUC

Length

7 nucleotides

Bulged bases

9K0Z|1|h|U|1713, 9K0Z|1|h|U|1717

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9K0Z_077 not in the Motif Atlas

Geometric match to HL_5J7L_170

Geometric discrepancy: 0.1029

The information below is about HL_5J7L_170

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_57176.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

9K0Z|1|h|G|1712
9K0Z|1|h|U|1713
9K0Z|1|h|A|1714
9K0Z|1|h|A|1715
9K0Z|1|h|A|1716
9K0Z|1|h|U|1717
9K0Z|1|h|C|1718

Current chains

Chain h

23S ribosomal RNA

Nearby chains

Chain i

Large ribosomal subunit protein uL2