HL_9K0Z_080

3D structure

PDB id

9K0Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

EF-G2 bound 70S ribosome complex of M. smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CAACACAG

Length

8 nucleotides

Bulged bases

9K0Z|1|h|A|1832, 9K0Z|1|h|A|1834, 9K0Z|1|h|A|1836

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9K0Z_080 not in the Motif Atlas

Geometric match to HL_5J7L_173

Geometric discrepancy: 0.1158

The information below is about HL_5J7L_173

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89567.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

8

Unit IDs

9K0Z|1|h|C|1830
9K0Z|1|h|A|1831
9K0Z|1|h|A|1832
9K0Z|1|h|C|1833
9K0Z|1|h|A|1834
9K0Z|1|h|C|1835
9K0Z|1|h|A|1836
9K0Z|1|h|G|1837

Current chains

Chain h

23S ribosomal RNA

Nearby chains

Chain d

Large ribosomal subunit protein bL34

Chain z

Large ribosomal subunit protein uL22