HL_9K0Z_087

3D structure

PDB id

9K0Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

EF-G2 bound 70S ribosome complex of M. smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CUUUG

Length

5 nucleotides

Bulged bases

9K0Z|1|h|U|2092

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9K0Z_087 not in the Motif Atlas

Geometric match to HL_5UD5_001

Geometric discrepancy: 0.3133

The information below is about HL_5UD5_001

Detailed Annotation

tRNA D-loop

Broad Annotation

tRNA D-loop

Motif group

HL_89167.1

Basepair signature

cWW-F-F

Number of instances in this motif group

20

Unit IDs

9K0Z|1|h|C|2089
9K0Z|1|h|U|2090
9K0Z|1|h|U|2091
9K0Z|1|h|U|2092
9K0Z|1|h|G|2093

Current chains

Chain h

23S ribosomal RNA

Nearby chains