HL_9K0Z_090

3D structure

PDB id

9K0Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

EF-G2 bound 70S ribosome complex of M. smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GUAAAGAUGC

Length

10 nucleotides

Bulged bases

9K0Z|1|h|A|2254, 9K0Z|1|h|A|2255, 9K0Z|1|h|G|2256

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9K0Z_090 not in the Motif Atlas

Geometric match to HL_5J7L_183

Geometric discrepancy: 0.1148

The information below is about HL_5J7L_183

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61996.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

9K0Z|1|h|G|2251
9K0Z|1|h|U|2252
9K0Z|1|h|A|2253
9K0Z|1|h|A|2254
9K0Z|1|h|A|2255
9K0Z|1|h|G|2256
9K0Z|1|h|A|2257
9K0Z|1|h|U|2258
9K0Z|1|h|G|2259
9K0Z|1|h|C|2260

Current chains

Chain h

23S ribosomal RNA

Nearby chains

Chain 3

50S ribosomal protein bL37

Chain b

Large ribosomal subunit protein bL32

Chain j

Large ribosomal subunit protein uL3