HL_9K0Z_097

3D structure

PDB id

9K0Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

EF-G2 bound 70S ribosome complex of M. smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CGGACAUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9K0Z_097 not in the Motif Atlas

Geometric match to HL_4WF9_053

Geometric discrepancy: 0.1929

The information below is about HL_4WF9_053

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_87268.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

9K0Z|1|h|C|2579
9K0Z|1|h|G|2580
9K0Z|1|h|G|2581
9K0Z|1|h|A|2582
9K0Z|1|h|C|2583
9K0Z|1|h|A|2584
9K0Z|1|h|U|2585
9K0Z|1|h|G|2586

Current chains

Chain h

23S ribosomal RNA

Nearby chains

Chain X

Large ribosomal subunit protein bL27

Chain e

Large ribosomal subunit protein bL35

Chain s

Large ribosomal subunit protein uL15