HL_9K0Z_098

3D structure

PDB id

9K0Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

EF-G2 bound 70S ribosome complex of M. smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9K0Z_098 not in the Motif Atlas

Geometric match to HL_5DDP_001

Geometric discrepancy: 0.0752

The information below is about HL_5DDP_001

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

9K0Z|1|h|C|2598
9K0Z|1|h|G|2599
9K0Z|1|h|A|2600
9K0Z|1|h|A|2601
9K0Z|1|h|A|2602
9K0Z|1|h|G|2603

Current chains

Chain h

23S ribosomal RNA

Nearby chains

Chain v

Large ribosomal subunit protein uL18