HL_9K0Z_106

3D structure

PDB id

9K0Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

EF-G2 bound 70S ribosome complex of M. smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

9K0Z|1|h|G|2975, 9K0Z|1|h|C|2979

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9K0Z_106 not in the Motif Atlas

Geometric match to HL_4WF9_062

Geometric discrepancy: 0.1412

The information below is about HL_4WF9_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53269.1

Basepair signature

cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

11

Unit IDs

9K0Z|1|h|C|2969
9K0Z|1|h|U|2970
9K0Z|1|h|G|2971
9K0Z|1|h|A|2972
9K0Z|1|h|A|2973
9K0Z|1|h|A|2974
9K0Z|1|h|G|2975
9K0Z|1|h|C|2976
9K0Z|1|h|A|2977
9K0Z|1|h|U|2978
9K0Z|1|h|C|2979
9K0Z|1|h|U|2980
9K0Z|1|h|A|2981
9K0Z|1|h|A|2982
9K0Z|1|h|G|2983

Current chains

Chain h

23S ribosomal RNA

Nearby chains

Chain f

50S ribosomal protein L36

Chain m

Large ribosomal subunit protein uL6

Chain q

Large ribosomal subunit protein uL13