HL_9K0Z_108

3D structure

PDB id

9K0Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

EF-G2 bound 70S ribosome complex of M. smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GCAGACCAC

Length

9 nucleotides

Bulged bases

9K0Z|1|h|C|3041

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9K0Z_108 not in the Motif Atlas

Geometric match to HL_5J7L_201

Geometric discrepancy: 0.1059

The information below is about HL_5J7L_201

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

9K0Z|1|h|G|3040
9K0Z|1|h|C|3041
9K0Z|1|h|A|3042
9K0Z|1|h|G|3043
9K0Z|1|h|A|3044
9K0Z|1|h|C|3045
9K0Z|1|h|C|3046
9K0Z|1|h|A|3047
9K0Z|1|h|C|3048

Current chains

Chain h

23S ribosomal RNA

Nearby chains

Chain b

Large ribosomal subunit protein bL32

Chain j

Large ribosomal subunit protein uL3

Chain u

Large ribosomal subunit protein bL17