HL_9K10_031

3D structure

PDB id

9K10 (explore in PDB, NAKB, or RNA 3D Hub)

Description

EF-G2 bound 50S ribosome subunit complex of M. smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

9K10|1|A|U|1184, 9K10|1|A|A|1188

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9K10_031 not in the Motif Atlas

Geometric match to HL_5J7L_161

Geometric discrepancy: 0.3167

The information below is about HL_5J7L_161

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.3

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

9K10|1|A|C|1182
9K10|1|A|U|1183
9K10|1|A|U|1184
9K10|1|A|A|1185
9K10|1|A|G|1186
9K10|1|A|A|1187
9K10|1|A|A|1188
9K10|1|A|G|1189
9K10|1|A|C|1190
9K10|1|A|A|1191
9K10|1|A|G|1192

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 5

Translation elongation factor EF-G

Chain J

50S ribosomal protein L11

Chain N

50S ribosomal protein L16