HL_9K10_034

3D structure

PDB id

9K10 (explore in PDB, NAKB, or RNA 3D Hub)

Description

EF-G2 bound 50S ribosome subunit complex of M. smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AGUGAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9K10_034 not in the Motif Atlas

Geometric match to HL_7A0S_031

Geometric discrepancy: 0.1435

The information below is about HL_7A0S_031

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

9K10|1|A|A|1336
9K10|1|A|G|1337
9K10|1|A|U|1338
9K10|1|A|G|1339
9K10|1|A|A|1340
9K10|1|A|U|1341

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain R

50S ribosomal protein L20

Chain S

50S ribosomal protein L21