HL_9K10_038

3D structure

PDB id

9K10 (explore in PDB, NAKB, or RNA 3D Hub)

Description

EF-G2 bound 50S ribosome subunit complex of M. smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUUGAUAUUC

Length

10 nucleotides

Bulged bases

9K10|1|A|U|1511, 9K10|1|A|U|1512

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9K10_038 not in the Motif Atlas

Geometric match to HL_4V9F_037

Geometric discrepancy: 0.1113

The information below is about HL_4V9F_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77449.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

9K10|1|A|G|1504
9K10|1|A|U|1505
9K10|1|A|U|1506
9K10|1|A|G|1507
9K10|1|A|A|1508
9K10|1|A|U|1509
9K10|1|A|A|1510
9K10|1|A|U|1511
9K10|1|A|U|1512
9K10|1|A|C|1513

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain U

50S ribosomal protein L23