HL_9K10_056

3D structure

PDB id

9K10 (explore in PDB, NAKB, or RNA 3D Hub)

Description

EF-G2 bound 50S ribosome subunit complex of M. smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUAAAAUGUAACG

Length

13 nucleotides

Bulged bases

9K10|1|A|A|2492, 9K10|1|A|C|2499

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9K10_056 not in the Motif Atlas

Geometric match to HL_4WF9_050

Geometric discrepancy: 0.0984

The information below is about HL_4WF9_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02042.1

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

12

Unit IDs

9K10|1|A|C|2488
9K10|1|A|U|2489
9K10|1|A|A|2490
9K10|1|A|A|2491
9K10|1|A|A|2492
9K10|1|A|A|2493
9K10|1|A|U|2494
9K10|1|A|G|2495
9K10|1|A|U|2496
9K10|1|A|A|2497
9K10|1|A|A|2498
9K10|1|A|C|2499
9K10|1|A|G|2500

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain N

50S ribosomal protein L16

Chain X

50S ribosomal protein L27