HL_9K10_071

3D structure

PDB id

9K10 (explore in PDB, NAKB, or RNA 3D Hub)

Description

EF-G2 bound 50S ribosome subunit complex of M. smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AGUAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9K10_071 not in the Motif Atlas

Geometric match to HL_4Y1M_004

Geometric discrepancy: 0.127

The information below is about HL_4Y1M_004

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

9K10|1|A|A|3077
9K10|1|A|G|3078
9K10|1|A|U|3079
9K10|1|A|A|3080
9K10|1|A|A|3081
9K10|1|A|U|3082

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 6

Translation elongation factor EF-G

Chain Q

50S ribosomal protein L19