HL_9K2Z_005

3D structure

PDB id

9K2Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HfmIscB-omega RNA-target DNA complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

CCAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9K2Z_005 not in the Motif Atlas

Geometric match to HL_8B0X_085

Geometric discrepancy: 0.1461

The information below is about HL_8B0X_085

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

9K2Z|1|B|C|314
9K2Z|1|B|C|315
9K2Z|1|B|A|316
9K2Z|1|B|G|317
9K2Z|1|B|A|318
9K2Z|1|B|G|319

Current chains

Chain B

Omega RNA

Nearby chains

Chain A

HfmIscB