HL_9KDT_009

3D structure

PDB id

9KDT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

GGUAAACUCC

Length

10 nucleotides

Bulged bases

9KDT|1|L5|G|314, 9KDT|1|L5|U|315

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KDT|1|L5|G|313
9KDT|1|L5|G|314
9KDT|1|L5|U|315
9KDT|1|L5|A|316
9KDT|1|L5|A|317
9KDT|1|L5|A|318
9KDT|1|L5|C|319
9KDT|1|L5|U|320
9KDT|1|L5|C|321
9KDT|1|L5|C|322

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LN

Large ribosomal subunit protein eL15

Chain La

Large ribosomal subunit protein uL15

Chain Li

Large ribosomal subunit protein eL36

Chain Lo

Large ribosomal subunit protein eL42