HL_9KDT_012

3D structure

PDB id

9KDT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

GGGCGGACUGUCCCCAGUGCGCC

Length

23 nucleotides

Bulged bases

9KDT|1|L5|G|1011, 9KDT|1|L5|U|1012, 9KDT|1|L5|C|1014, 9KDT|1|L5|C|1015

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KDT|1|L5|G|1002
9KDT|1|L5|G|1003
9KDT|1|L5|G|1004
9KDT|1|L5|C|1005
9KDT|1|L5|G|1006
9KDT|1|L5|G|1007
9KDT|1|L5|A|1008
9KDT|1|L5|C|1009
9KDT|1|L5|U|1010
9KDT|1|L5|G|1011
9KDT|1|L5|U|1012
9KDT|1|L5|C|1013
9KDT|1|L5|C|1014
9KDT|1|L5|C|1015
9KDT|1|L5|C|1016
9KDT|1|L5|A|1017
9KDT|1|L5|G|1018
9KDT|1|L5|U|1019
9KDT|1|L5|G|1020
9KDT|1|L5|C|1021
9KDT|1|L5|G|1022
9KDT|1|L5|C|1023
9KDT|1|L5|C|1024

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain L7

5S ribosomal RNA; 5S rRNA

Chain LD

Large ribosomal subunit protein uL18

Chain LI

Large ribosomal subunit protein uL16-like