HL_9KDT_017

3D structure

PDB id

9KDT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

CCUCUCCAGUCCG

Length

13 nucleotides

Bulged bases

9KDT|1|L5|C|1253, 9KDT|1|L5|U|1254, 9KDT|1|L5|C|1255

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KDT|1|L5|C|1250
9KDT|1|L5|C|1251
9KDT|1|L5|U|1252
9KDT|1|L5|C|1253
9KDT|1|L5|U|1254
9KDT|1|L5|C|1255
9KDT|1|L5|C|1256
9KDT|1|L5|A|1257
9KDT|1|L5|G|1258
9KDT|1|L5|U|1259
9KDT|1|L5|C|1260
9KDT|1|L5|C|1261
9KDT|1|L5|G|1262

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LC

Large ribosomal subunit protein uL4

Chain LQ

Large ribosomal subunit protein eL18

Chain Lb

Large ribosomal subunit protein eL29