HL_9KDT_020

3D structure

PDB id

9KDT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

ACGUGCAAAU

Length

10 nucleotides

Bulged bases

9KDT|1|L5|U|1410, 9KDT|1|L5|A|1414, 9KDT|1|L5|A|1415

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KDT|1|L5|A|1407
9KDT|1|L5|C|1408
9KDT|1|L5|G|1409
9KDT|1|L5|U|1410
9KDT|1|L5|G|1411
9KDT|1|L5|C|1412
9KDT|1|L5|A|1413
9KDT|1|L5|A|1414
9KDT|1|L5|A|1415
9KDT|1|L5|U|1416

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LB

Large ribosomal subunit protein uL3

Chain LP

Large ribosomal subunit protein uL22

Chain Lj

Large ribosomal subunit protein eL37

Chain Z

Nascent peptide