HL_9KDT_041

3D structure

PDB id

9KDT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

UUUAAUUAAAA

Length

11 nucleotides

Bulged bases

9KDT|1|L5|A|3299, 9KDT|1|L5|A|3300, 9KDT|1|L5|U|3301, 9KDT|1|L5|A|3305

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KDT|1|L5|U|3296
9KDT|1|L5|U|3297
9KDT|1|L5|U|3298
9KDT|1|L5|A|3299
9KDT|1|L5|A|3300
9KDT|1|L5|U|3301
9KDT|1|L5|U|3302
9KDT|1|L5|A|3303
9KDT|1|L5|A|3304
9KDT|1|L5|A|3305
9KDT|1|L5|A|3306

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LA

Large ribosomal subunit protein uL2

Chain Lj

Large ribosomal subunit protein eL37

Chain Z

Nascent peptide