HL_9KDT_048

3D structure

PDB id

9KDT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

UCAAACGGUAACG

Length

13 nucleotides

Bulged bases

9KDT|1|L5|A|3867, 9KDT|1|L5|C|3874

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KDT|1|L5|U|3863
9KDT|1|L5|C|3864
9KDT|1|L5|A|3865
9KDT|1|L5|A|3866
9KDT|1|L5|A|3867
9KDT|1|L5|C|3868
9KDT|1|L5|G|3869
9KDT|1|L5|G|3870
9KDT|1|L5|U|3871
9KDT|1|L5|A|3872
9KDT|1|L5|A|3873
9KDT|1|L5|C|3874
9KDT|1|L5|G|3875

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LI

Large ribosomal subunit protein uL16-like

Chain LT

Large ribosomal subunit protein eL21

Chain Lb

Large ribosomal subunit protein eL29