HL_9KDT_060

3D structure

PDB id

9KDT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

9KDT|1|L5|G|4347, 9KDT|1|L5|C|4351

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KDT|1|L5|C|4341
9KDT|1|L5|U|4342
9KDT|1|L5|G|4343
9KDT|1|L5|A|4344
9KDT|1|L5|A|4345
9KDT|1|L5|C|4346
9KDT|1|L5|G|4347
9KDT|1|L5|C|4348
9KDT|1|L5|C|4349
9KDT|1|L5|U|4350
9KDT|1|L5|C|4351
9KDT|1|L5|U|4352
9KDT|1|L5|A|4353
9KDT|1|L5|A|4354
9KDT|1|L5|G|4355

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LH

Large ribosomal subunit protein uL6

Chain LO

Large ribosomal subunit protein uL13

Chain Lm

Ubiquitin-ribosomal protein eL40 fusion protein