HL_9KDT_068

3D structure

PDB id

9KDT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

GUUCCUC

Length

7 nucleotides

Bulged bases

9KDT|1|L8|C|125, 9KDT|1|L8|C|126

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KDT|1|L8|G|122
9KDT|1|L8|U|123
9KDT|1|L8|U|124
9KDT|1|L8|C|125
9KDT|1|L8|C|126
9KDT|1|L8|U|127
9KDT|1|L8|C|128

Current chains

Chain L8

Mus musculus 5.8S ribosomal RNA

Nearby chains

Chain L5

Large subunit ribosomal RNA; LSU rRNA

Chain LX

Large ribosomal subunit protein uL23