HL_9KDT_071
3D structure
- PDB id
- 9KDT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.63 Å
Loop
- Sequence
- GGAUAACUGUGGUAAUUCUAGAGCUAAUAC
- Length
- 30 nucleotides
- Bulged bases
- 9KDT|1|S2|U|161, 9KDT|1|S2|U|163, 9KDT|1|S2|U|172
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9KDT|1|S2|G|145
9KDT|1|S2|G|146
9KDT|1|S2|A|147
9KDT|1|S2|U|148
9KDT|1|S2|A|149
9KDT|1|S2|A|150
9KDT|1|S2|C|151
9KDT|1|S2|U|152
9KDT|1|S2|G|153
9KDT|1|S2|U|154
9KDT|1|S2|G|155
9KDT|1|S2|G|156
9KDT|1|S2|U|157
9KDT|1|S2|A|158
9KDT|1|S2|A|159
9KDT|1|S2|U|160
9KDT|1|S2|U|161
9KDT|1|S2|C|162
9KDT|1|S2|U|163
9KDT|1|S2|A|164
9KDT|1|S2|G|165
9KDT|1|S2|A|166
9KDT|1|S2|G|167
9KDT|1|S2|C|168
9KDT|1|S2|U|169
9KDT|1|S2|A|170
9KDT|1|S2|A|171
9KDT|1|S2|U|172
9KDT|1|S2|A|173
9KDT|1|S2|C|174
Current chains
- Chain S2
- Mus musculus 18S ribosomal RNA
Nearby chains
- Chain SG
- Small ribosomal subunit protein eS6
- Chain SY
- Small ribosomal subunit protein eS24
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