HL_9KDT_075

3D structure

PDB id

9KDT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

CCUGAGAAACGG

Length

12 nucleotides

Bulged bases

9KDT|1|S2|C|451, 9KDT|1|S2|G|452

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KDT|1|S2|C|442
9KDT|1|S2|C|443
9KDT|1|S2|U|444
9KDT|1|S2|G|445
9KDT|1|S2|A|446
9KDT|1|S2|G|447
9KDT|1|S2|A|448
9KDT|1|S2|A|449
9KDT|1|S2|A|450
9KDT|1|S2|C|451
9KDT|1|S2|G|452
9KDT|1|S2|G|453

Current chains

Chain S2

Mus musculus 18S ribosomal RNA

Nearby chains

Chain SE

Small ribosomal subunit protein eS4

Chain SG

Small ribosomal subunit protein eS6

Chain SI

Small ribosomal subunit protein eS8