HL_9KDT_078

3D structure

PDB id

9KDT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

GACUCUUUCGAGGC

Length

14 nucleotides

Bulged bases

9KDT|1|S2|A|537, 9KDT|1|S2|U|542, 9KDT|1|S2|G|548

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KDT|1|S2|G|536
9KDT|1|S2|A|537
9KDT|1|S2|C|538
9KDT|1|S2|U|539
9KDT|1|S2|C|540
9KDT|1|S2|U|541
9KDT|1|S2|U|542
9KDT|1|S2|U|543
9KDT|1|S2|C|544
9KDT|1|S2|G|545
9KDT|1|S2|A|546
9KDT|1|S2|G|547
9KDT|1|S2|G|548
9KDT|1|S2|C|549

Current chains

Chain S2

Mus musculus 18S ribosomal RNA

Nearby chains

Chain Se

Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein