HL_9KDT_079

3D structure

PDB id

9KDT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

ACUUUAAAUCCUU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KDT|1|S2|A|570
9KDT|1|S2|C|571
9KDT|1|S2|U|572
9KDT|1|S2|U|573
9KDT|1|S2|U|574
9KDT|1|S2|A|575
9KDT|1|S2|A|576
9KDT|1|S2|A|577
9KDT|1|S2|U|578
9KDT|1|S2|C|579
9KDT|1|S2|C|580
9KDT|1|S2|U|581
9KDT|1|S2|U|582

Current chains

Chain S2

Mus musculus 18S ribosomal RNA

Nearby chains

Chain SJ

Small ribosomal subunit protein uS4

Chain SY

Small ribosomal subunit protein eS24