HL_9KDT_082

3D structure

PDB id

9KDT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

GGCCCGAGCCGCC

Length

13 nucleotides

Bulged bases

9KDT|1|S2|G|837, 9KDT|1|S2|G|839

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KDT|1|S2|G|832
9KDT|1|S2|G|833
9KDT|1|S2|C|834
9KDT|1|S2|C|835
9KDT|1|S2|C|836
9KDT|1|S2|G|837
9KDT|1|S2|A|838
9KDT|1|S2|G|839
9KDT|1|S2|C|840
9KDT|1|S2|C|841
9KDT|1|S2|G|842
9KDT|1|S2|C|843
9KDT|1|S2|C|844

Current chains

Chain S2

Mus musculus 18S ribosomal RNA

Nearby chains

Chain SE

Small ribosomal subunit protein eS4

Chain SY

Small ribosomal subunit protein eS24