HL_9KDT_091
3D structure
- PDB id
- 9KDT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.63 Å
Loop
- Sequence
- ACAGGAUUGACAGAUUGAUAGCUCUUUCUCGAUU
- Length
- 34 nucleotides
- Bulged bases
- 9KDT|1|S2|A|1285, 9KDT|1|S2|G|1286, 9KDT|1|S2|U|1297, 9KDT|1|S2|U|1301, 9KDT|1|S2|U|1315
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9KDT|1|S2|A|1283
9KDT|1|S2|C|1284
9KDT|1|S2|A|1285
9KDT|1|S2|G|1286
9KDT|1|S2|G|1287
9KDT|1|S2|A|1288
9KDT|1|S2|U|1289
9KDT|1|S2|U|1290
9KDT|1|S2|G|1291
9KDT|1|S2|A|1292
9KDT|1|S2|C|1293
9KDT|1|S2|A|1294
9KDT|1|S2|G|1295
9KDT|1|S2|A|1296
9KDT|1|S2|U|1297
9KDT|1|S2|U|1298
9KDT|1|S2|G|1299
9KDT|1|S2|A|1300
9KDT|1|S2|U|1301
9KDT|1|S2|A|1302
9KDT|1|S2|G|1303
9KDT|1|S2|C|1304
9KDT|1|S2|U|1305
9KDT|1|S2|C|1306
9KDT|1|S2|U|1307
9KDT|1|S2|U|1308
9KDT|1|S2|U|1309
9KDT|1|S2|C|1310
9KDT|1|S2|U|1311
9KDT|1|S2|C|1312
9KDT|1|S2|G|1313
9KDT|1|S2|A|1314
9KDT|1|S2|U|1315
9KDT|1|S2|U|1316
Current chains
- Chain S2
- Mus musculus 18S ribosomal RNA
Nearby chains
- Chain SK
- Small ribosomal subunit protein eS10
- Chain SP
- Small ribosomal subunit protein uS19
- Chain Sd
- Small ribosomal subunit protein uS14
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