HL_9KDT_097

3D structure

PDB id

9KDT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

AUUGCAAUUAUU

Length

12 nucleotides

Bulged bases

9KDT|1|S2|U|1622, 9KDT|1|S2|U|1623, 9KDT|1|S2|A|1624

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KDT|1|S2|A|1615
9KDT|1|S2|U|1616
9KDT|1|S2|U|1617
9KDT|1|S2|G|1618
9KDT|1|S2|C|1619
9KDT|1|S2|A|1620
9KDT|1|S2|A|1621
9KDT|1|S2|U|1622
9KDT|1|S2|U|1623
9KDT|1|S2|A|1624
9KDT|1|S2|U|1625
9KDT|1|S2|U|1626

Current chains

Chain S2

Mus musculus 18S ribosomal RNA

Nearby chains

Chain SP

Small ribosomal subunit protein uS19

Chain SS

Small ribosomal subunit protein uS13

Chain ST

Small ribosomal subunit protein eS19

Chain Sd

Small ribosomal subunit protein uS14