HL_9KDT_100
3D structure
- PDB id
- 9KDT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.63 Å
Loop
- Sequence
- UGGGCCCAUAACCCA
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9KDT|1|S6|U|28
9KDT|1|S6|G|29
9KDT|1|S6|G|30
9KDT|1|S6|G|31
9KDT|1|S6|C|32
9KDT|1|S6|C|33
9KDT|1|S6|C|34
9KDT|1|S6|A|35
9KDT|1|S6|U|36
9KDT|1|S6|A|37
9KDT|1|S6|A|38
9KDT|1|S6|C|39
9KDT|1|S6|C|40
9KDT|1|S6|C|41
9KDT|1|S6|A|42
Current chains
- Chain S6
- P/P, E/E tRNA
Nearby chains
- Chain S2
- Small subunit ribosomal RNA; SSU rRNA
- Chain S7
- Transfer RNA; tRNA
- Chain SF
- Small ribosomal subunit protein uS7
- Chain SO
- Small ribosomal subunit protein uS11
- Chain Sc
- Small ribosomal subunit protein eS28
- Chain Sx
- RNA (5'-R(P*AP*UP*CP*AP*UP*GP*AP*AP*GP*U)-3')
Coloring options: