HL_9KDU_012
3D structure
- PDB id
- 9KDU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.96 Å
Loop
- Sequence
- GGCGGACUGUCCCCAGUGCGC
- Length
- 21 nucleotides
- Bulged bases
- 9KDU|1|L5|G|1011, 9KDU|1|L5|U|1012, 9KDU|1|L5|C|1014, 9KDU|1|L5|C|1015
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9KDU|1|L5|G|1003
9KDU|1|L5|G|1004
9KDU|1|L5|C|1005
9KDU|1|L5|G|1006
9KDU|1|L5|G|1007
9KDU|1|L5|A|1008
9KDU|1|L5|C|1009
9KDU|1|L5|U|1010
9KDU|1|L5|G|1011
9KDU|1|L5|U|1012
9KDU|1|L5|C|1013
9KDU|1|L5|C|1014
9KDU|1|L5|C|1015
9KDU|1|L5|C|1016
9KDU|1|L5|A|1017
9KDU|1|L5|G|1018
9KDU|1|L5|U|1019
9KDU|1|L5|G|1020
9KDU|1|L5|C|1021
9KDU|1|L5|G|1022
9KDU|1|L5|C|1023
Current chains
- Chain L5
- Mus musculus 28S ribosomal RNA
Nearby chains
- Chain L7
- 5S ribosomal RNA; 5S rRNA
- Chain LD
- Large ribosomal subunit protein uL18
- Chain LI
- Large ribosomal subunit protein uL16-like
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