HL_9KDU_071
3D structure
- PDB id
- 9KDU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.96 Å
Loop
- Sequence
- GGAUAACUGUGGUAAUUCUAGAGCUAAUAC
- Length
- 30 nucleotides
- Bulged bases
- 9KDU|1|S2|G|153, 9KDU|1|S2|G|156, 9KDU|1|S2|U|161, 9KDU|1|S2|U|172
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9KDU|1|S2|G|145
9KDU|1|S2|G|146
9KDU|1|S2|A|147
9KDU|1|S2|U|148
9KDU|1|S2|A|149
9KDU|1|S2|A|150
9KDU|1|S2|C|151
9KDU|1|S2|U|152
9KDU|1|S2|G|153
9KDU|1|S2|U|154
9KDU|1|S2|G|155
9KDU|1|S2|G|156
9KDU|1|S2|U|157
9KDU|1|S2|A|158
9KDU|1|S2|A|159
9KDU|1|S2|U|160
9KDU|1|S2|U|161
9KDU|1|S2|C|162
9KDU|1|S2|U|163
9KDU|1|S2|A|164
9KDU|1|S2|G|165
9KDU|1|S2|A|166
9KDU|1|S2|G|167
9KDU|1|S2|C|168
9KDU|1|S2|U|169
9KDU|1|S2|A|170
9KDU|1|S2|A|171
9KDU|1|S2|U|172
9KDU|1|S2|A|173
9KDU|1|S2|C|174
Current chains
- Chain S2
- Mus musculus 18S ribosomal RNA
Nearby chains
- Chain SG
- Small ribosomal subunit protein eS6
- Chain SY
- Small ribosomal subunit protein eS24
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