HL_9KDU_075

3D structure

PDB id

9KDU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

CCUGAGAAACGG

Length

12 nucleotides

Bulged bases

9KDU|1|S2|C|451, 9KDU|1|S2|G|452

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KDU|1|S2|C|442
9KDU|1|S2|C|443
9KDU|1|S2|U|444
9KDU|1|S2|G|445
9KDU|1|S2|A|446
9KDU|1|S2|G|447
9KDU|1|S2|A|448
9KDU|1|S2|A|449
9KDU|1|S2|A|450
9KDU|1|S2|C|451
9KDU|1|S2|G|452
9KDU|1|S2|G|453

Current chains

Chain S2

Mus musculus 18S ribosomal RNA

Nearby chains

Chain SE

Small ribosomal subunit protein eS4

Chain SG

Small ribosomal subunit protein eS6

Chain SI

Small ribosomal subunit protein eS8