HL_9KDU_078

3D structure

PDB id

9KDU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

GGACUCUUUCGAGGCC

Length

16 nucleotides

Bulged bases

9KDU|1|S2|U|541, 9KDU|1|S2|U|542, 9KDU|1|S2|G|545, 9KDU|1|S2|G|548

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KDU|1|S2|G|535
9KDU|1|S2|G|536
9KDU|1|S2|A|537
9KDU|1|S2|C|538
9KDU|1|S2|U|539
9KDU|1|S2|C|540
9KDU|1|S2|U|541
9KDU|1|S2|U|542
9KDU|1|S2|U|543
9KDU|1|S2|C|544
9KDU|1|S2|G|545
9KDU|1|S2|A|546
9KDU|1|S2|G|547
9KDU|1|S2|G|548
9KDU|1|S2|C|549
9KDU|1|S2|C|550

Current chains

Chain S2

Mus musculus 18S ribosomal RNA

Nearby chains

Chain Se

Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein