HL_9KDU_079

3D structure

PDB id

9KDU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

ACUUUAAAUCCUU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KDU|1|S2|A|570
9KDU|1|S2|C|571
9KDU|1|S2|U|572
9KDU|1|S2|U|573
9KDU|1|S2|U|574
9KDU|1|S2|A|575
9KDU|1|S2|A|576
9KDU|1|S2|A|577
9KDU|1|S2|U|578
9KDU|1|S2|C|579
9KDU|1|S2|C|580
9KDU|1|S2|U|581
9KDU|1|S2|U|582

Current chains

Chain S2

Mus musculus 18S ribosomal RNA

Nearby chains

Chain SJ

Small ribosomal subunit protein uS4

Chain SY

Small ribosomal subunit protein eS24