HL_9KDU_081

3D structure

PDB id

9KDU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

UGUUCAAAG

Length

9 nucleotides

Bulged bases

9KDU|1|S2|G|822

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KDU|1|S2|U|821
9KDU|1|S2|G|822
9KDU|1|S2|U|823
9KDU|1|S2|U|824
9KDU|1|S2|C|825
9KDU|1|S2|A|826
9KDU|1|S2|A|827
9KDU|1|S2|A|828
9KDU|1|S2|G|829

Current chains

Chain S2

Mus musculus 18S ribosomal RNA

Nearby chains

Chain SE

Small ribosomal subunit protein eS4

Chain SJ

Small ribosomal subunit protein uS4

Chain SY

Small ribosomal subunit protein eS24