HL_9KDU_098

3D structure

PDB id

9KDU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

CAGCGGAAG

Length

9 nucleotides

Bulged bases

9KDU|1|S7|C|17, 9KDU|1|S7|G|18, 9KDU|1|S7|G|19, 9KDU|1|S7|A|20

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9KDU_098 not in the Motif Atlas

Homologous match to HL_4YYE_001

Geometric discrepancy: 0.2397

The information below is about HL_4YYE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KDU|1|S7|C|14
9KDU|1|S7|A|15
9KDU|1|S7|G|16
9KDU|1|S7|C|17
9KDU|1|S7|G|18
9KDU|1|S7|G|19
9KDU|1|S7|A|20
9KDU|1|S7|A|21
9KDU|1|S7|G|22

Current chains

Chain S7

P tRNA

Nearby chains

Chain L5

Large subunit ribosomal RNA; LSU rRNA

Chain LJ

Large ribosomal subunit protein uL5

Chain Lo

Large ribosomal subunit protein eL42