HL_9KDW_031

3D structure

PDB id

9KDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

GUUCAGAUCC

Length

10 nucleotides

Bulged bases

9KDW|1|L5|U|2287, 9KDW|1|L5|C|2288

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KDW|1|L5|G|2280
9KDW|1|L5|U|2281
9KDW|1|L5|U|2282
9KDW|1|L5|C|2283
9KDW|1|L5|A|2284
9KDW|1|L5|G|2285
9KDW|1|L5|A|2286
9KDW|1|L5|U|2287
9KDW|1|L5|C|2288
9KDW|1|L5|C|2289

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LR

Large ribosomal subunit protein eL19

Chain LX

Large ribosomal subunit protein uL23

Chain Lg

Large ribosomal subunit protein eL34