HL_9KDW_046

3D structure

PDB id

9KDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

9KDW|1|L5|A|3533, 9KDW|1|L5|A|3534, 9KDW|1|L5|C|3535

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KDW|1|L5|G|3530
9KDW|1|L5|G|3531
9KDW|1|L5|G|3532
9KDW|1|L5|A|3533
9KDW|1|L5|A|3534
9KDW|1|L5|C|3535
9KDW|1|L5|G|3536
9KDW|1|L5|G|3537
9KDW|1|L5|G|3538
9KDW|1|L5|C|3539

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LB

Large ribosomal subunit protein uL3

Chain Le

Large ribosomal subunit protein eL32