HL_9KDW_089

3D structure

PDB id

9KDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

GAUUGAUAGCUC

Length

12 nucleotides

Bulged bases

9KDW|1|S2|U|1301

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KDW|1|S2|G|1295
9KDW|1|S2|A|1296
9KDW|1|S2|U|1297
9KDW|1|S2|U|1298
9KDW|1|S2|G|1299
9KDW|1|S2|A|1300
9KDW|1|S2|U|1301
9KDW|1|S2|A|1302
9KDW|1|S2|G|1303
9KDW|1|S2|C|1304
9KDW|1|S2|U|1305
9KDW|1|S2|C|1306

Current chains

Chain S2

Mus musculus 18S ribosomal RNA

Nearby chains

Chain SP

Small ribosomal subunit protein uS19

Chain Sd

Small ribosomal subunit protein uS14