HL_9KKF_012

3D structure

PDB id

9KKF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 40S ribosome complexed with HCV IRES and eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GACUCUUUCGAGGC

Length

14 nucleotides

Bulged bases

9KKF|1|S2|A|536

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KKF|1|S2|G|535
9KKF|1|S2|A|536
9KKF|1|S2|C|537
9KKF|1|S2|U|538
9KKF|1|S2|C|539
9KKF|1|S2|U|540
9KKF|1|S2|U|541
9KKF|1|S2|U|542
9KKF|1|S2|C|543
9KKF|1|S2|G|544
9KKF|1|S2|A|545
9KKF|1|S2|G|546
9KKF|1|S2|G|547
9KKF|1|S2|C|548

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain Se

40S ribosomal protein S30