HL_9KKF_037

3D structure

PDB id

9KKF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 40S ribosome complexed with HCV IRES and eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUCCUUUCUUGGAUCAACC

Length

19 nucleotides

Bulged bases

9KKF|1|zz|U|194, 9KKF|1|zz|U|195, 9KKF|1|zz|U|196, 9KKF|1|zz|U|198

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KKF|1|zz|G|190
9KKF|1|zz|U|191
9KKF|1|zz|C|192
9KKF|1|zz|C|193
9KKF|1|zz|U|194
9KKF|1|zz|U|195
9KKF|1|zz|U|196
9KKF|1|zz|C|197
9KKF|1|zz|U|198
9KKF|1|zz|U|199
9KKF|1|zz|G|200
9KKF|1|zz|G|201
9KKF|1|zz|A|202
9KKF|1|zz|U|203
9KKF|1|zz|C|204
9KKF|1|zz|A|205
9KKF|1|zz|A|206
9KKF|1|zz|C|207
9KKF|1|zz|C|208

Current chains

Chain zz

HCV-IRES RNA

Nearby chains

Chain 3a

Eukaryotic translation initiation factor 3 subunit A

Chain 3c

Eukaryotic translation initiation factor 3 subunit C

Chain 3h

Eukaryotic translation initiation factor 3 subunit H