HL_9KKF_039

3D structure

PDB id

9KKF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 40S ribosome complexed with HCV IRES and eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGUUGGGUCG

Length

10 nucleotides

Bulged bases

9KKF|1|zz|U|269

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KKF|1|zz|U|262
9KKF|1|zz|G|263
9KKF|1|zz|U|264
9KKF|1|zz|U|265
9KKF|1|zz|G|266
9KKF|1|zz|G|267
9KKF|1|zz|G|268
9KKF|1|zz|U|269
9KKF|1|zz|C|270
9KKF|1|zz|G|271

Current chains

Chain zz

HCV-IRES RNA

Nearby chains

Chain S2

Small subunit ribosomal RNA; SSU rRNA

Chain SB

40S ribosomal protein S3a

Chain Sb

40S ribosomal protein S27