HL_9KMT_009

3D structure

PDB id

9KMT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bat SARSr-CoV RaTG15 Nsp1 bound to the Human 40S Ribosomal subunit-State1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.81 Å

Loop

Sequence

CCAAGG

Length

6 nucleotides

Bulged bases

9KMT|1|2|A|464

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9KMT_009 not in the Motif Atlas

Homologous match to HL_9H3G_087

Geometric discrepancy: 0.0941

The information below is about HL_9H3G_087

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61337.7

Basepair signature

cWW-tSW-F

Number of instances in this motif group

72

Unit IDs

9KMT|1|2|C|462
9KMT|1|2|C|463
9KMT|1|2|A|464
9KMT|1|2|A|465
9KMT|1|2|G|466
9KMT|1|2|G|467

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain G

Small ribosomal subunit protein eS6