HL_9KMT_015

3D structure

PDB id

9KMT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bat SARSr-CoV RaTG15 Nsp1 bound to the Human 40S Ribosomal subunit-State1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.81 Å

Loop

Sequence

CUAUUUUGUUGGUUUUCGG

Length

19 nucleotides

Bulged bases

9KMT|1|2|A|886, 9KMT|1|2|U|887, 9KMT|1|2|U|888, 9KMT|1|2|U|889, 9KMT|1|2|U|890, 9KMT|1|2|G|891, 9KMT|1|2|U|892, 9KMT|1|2|U|893, 9KMT|1|2|G|894, 9KMT|1|2|G|895, 9KMT|1|2|U|896, 9KMT|1|2|U|897, 9KMT|1|2|U|898, 9KMT|1|2|U|899, 9KMT|1|2|C|900, 9KMT|1|2|G|901

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KMT|1|2|C|884
9KMT|1|2|U|885
9KMT|1|2|A|886
9KMT|1|2|U|887
9KMT|1|2|U|888
9KMT|1|2|U|889
9KMT|1|2|U|890
9KMT|1|2|G|891
9KMT|1|2|U|892
9KMT|1|2|U|893
9KMT|1|2|G|894
9KMT|1|2|G|895
9KMT|1|2|U|896
9KMT|1|2|U|897
9KMT|1|2|U|898
9KMT|1|2|U|899
9KMT|1|2|C|900
9KMT|1|2|G|901
9KMT|1|2|G|902

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain G

Small ribosomal subunit protein eS6