HL_9KMT_023

3D structure

PDB id

9KMT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bat SARSr-CoV RaTG15 Nsp1 bound to the Human 40S Ribosomal subunit-State1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.81 Å

Loop

Sequence

GACAGGAUUGACAGAUUGAUAGCUCUUUCUCGAUUC

Length

36 nucleotides

Bulged bases

9KMT|1|2|A|1282, 9KMT|1|2|C|1283, 9KMT|1|2|U|1288, 9KMT|1|2|U|1289, 9KMT|1|2|G|1290, 9KMT|1|2|G|1294, 9KMT|1|2|A|1295, 9KMT|1|2|U|1296, 9KMT|1|2|U|1297, 9KMT|1|2|G|1298, 9KMT|1|2|U|1300, 9KMT|1|2|C|1303, 9KMT|1|2|U|1307, 9KMT|1|2|C|1309, 9KMT|1|2|U|1310, 9KMT|1|2|G|1312

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KMT|1|2|G|1281
9KMT|1|2|A|1282
9KMT|1|2|C|1283
9KMT|1|2|A|1284
9KMT|1|2|G|1285
9KMT|1|2|G|1286
9KMT|1|2|A|1287
9KMT|1|2|U|1288
9KMT|1|2|U|1289
9KMT|1|2|G|1290
9KMT|1|2|A|1291
9KMT|1|2|C|1292
9KMT|1|2|A|1293
9KMT|1|2|G|1294
9KMT|1|2|A|1295
9KMT|1|2|U|1296
9KMT|1|2|U|1297
9KMT|1|2|G|1298
9KMT|1|2|A|1299
9KMT|1|2|U|1300
9KMT|1|2|A|1301
9KMT|1|2|G|1302
9KMT|1|2|C|1303
9KMT|1|2|U|1304
9KMT|1|2|C|1305
9KMT|1|2|U|1306
9KMT|1|2|U|1307
9KMT|1|2|U|1308
9KMT|1|2|C|1309
9KMT|1|2|U|1310
9KMT|1|2|C|1311
9KMT|1|2|G|1312
9KMT|1|2|A|1313
9KMT|1|2|U|1314
9KMT|1|2|U|1315
9KMT|1|2|C|1316

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain K

Small ribosomal subunit protein eS10

Chain M

Small ribosomal subunit protein eS12

Chain P

Small ribosomal subunit protein uS19

Chain d

Small ribosomal subunit protein uS14

Chain f

Small ribosomal subunit protein eS31